Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
LAML rs72773730 chr9:138978746 C/T 0.000119 109 13.2 16.17 0 KM Plot
LAML rs72773735 chr9:138983537 G/C 0.000119 109 13.2 16.17 0 KM Plot
LAML rs72773990 chr16:15978821 T/A 0.000171 110 16.23 13.1 0 KM Plot
LAML rs72799894 chr16:71707388 G/A 0.000186 108 15.2 13.1 0 KM Plot
LAML rs72801717 chr16:71737164 T/C 0.000153 111 15.23 13.1 0 KM Plot
LAML rs72801722 chr16:71745709 G/A 0.000157 111 15.7 12.12 0 KM Plot
LAML rs72801729 chr16:71759672 A/G 0.000163 110 15.2 13.1 0 KM Plot
LAML rs72801748 chr16:71824672 A/G 0.000128 110 16.17 10.63 0 KM Plot
LAML rs72827703 chr17:30520411 G/C 4.34E-5 111 14.67 15.23 0.52 KM Plot
LAML rs72827711 chr17:30537920 T/A 4.34E-5 111 14.67 15.23 0.52 KM Plot
LAML rs72827712 chr17:30538600 A/G 4.34E-5 111 14.67 15.23 0.52 KM Plot
LAML rs72827721 chr17:30559088 G/C 0.000119 111 14.67 15.2 0 KM Plot
LAML rs72830028 chr17:39610751 T/C 0.000107 111 14.22 17.2 0 KM Plot
LAML rs72919749 chr11:58323467 T/C 1.74E-5 110 18.75 11.15 4.58 KM Plot
LAML rs72995704 chr19:12538369 C/T 4.1E-6 110 5.62 22.37 13.1 KM Plot